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I will check on that. At the time Inno Setup would only create the one folder. This seems to have changed and if this is the case, I will need to change the documentation.

Thanks a lot for your quick respons!
 
I got a little confused,  
In the help file it said: Getting Started: Add Folder:
Add complete contents of folder of which to include in your installation. This would include all files that are in the folder at the time of the compilation of the script. This would not include other folders inside of that folder. Each folder would need to be added separately.
 
When trying the install without adding the subfolders they are still created (lucky for me). Does this only apply to empty subfolder?

By that I mean the choice on the left of the Add Folders tab. It will install the folder in that location. If you choose {app} it will go there, if you choose {cf} it will go there...

Yes, if you add the folder / sub-folder InnoScript will place them in the same sub-folder in the chosen installation destination .

If I understood it correctly,
When adding folders it is not possible to include also the subfolders of that folder directly.  
When adding the subfolders seperately, is it possible with InnoScript to place them in that folder?
{app}Folder
{app}FolderSubfolder